diff --git a/_posts/2019-12-01-release-the-gil.md b/_posts/2019-12-01-release-the-gil.md index 4a5183d..8495cb0 100644 --- a/_posts/2019-12-01-release-the-gil.md +++ b/_posts/2019-12-01-release-the-gil.md @@ -6,11 +6,11 @@ category: tags: [python] --- -Complaining about the [Global Interpreter Lock](https://wiki.python.org/moin/GlobalInterpreterLock) seems like a rite of passage for Python developers. It's easy to make fun of a design decision made back before multi-core CPU's were widely available, but in truth, it's generally [Good Enough](https://wiki.c2.com/?PrematureOptimization). Besides, it's not hard to start a [new process](https://docs.python.org/3/library/multiprocessing.html) and use message passing to synchronize. As an API design metaphor, message passing is great. +Complaining about the [Global Interpreter Lock](https://wiki.python.org/moin/GlobalInterpreterLock) seems like a rite of passage for Python developers. It's easy to make fun of a design decision made before multi-core CPU's were widely available, but the fact that it's still around indicates that it generally works [Good](https://wiki.c2.com/?PrematureOptimization) [Enough](https://wiki.c2.com/?YouArentGonnaNeedIt). Besides, it's not hard to start a [new process](https://docs.python.org/3/library/multiprocessing.html) and use message passing to synchronize if there's a need to run things in parallel. Still, one often wonders what could be possible if only the GIL wasn't holding them back. The thought of having only a single active interpreter thread seems so old-fashioned in an era where NodeJS and Go allow scheduling $M$ coroutines to $N$ system threads. Why can't Python learn to break free? -Presented below are some strategies for breaking free of the GIL's icy grip. Bear in mind that these are just the tools, and no claim is made about whether it's a good idea to use them. Very often, unlocking the GIL is an [XY problem](https://en.wikipedia.org/wiki/XY_problem); you want application performance, and the GIL seems like an obvious bottleneck. Just remember that you're intentionally breaking Python's memory model, and here be dragons. +Presented below are some strategies for releasing the GIL's icy grip. Bear in mind that these are just the tools, and no claim is made about whether it's a good idea to use them. Very often, unlocking the GIL is an [XY problem](https://en.wikipedia.org/wiki/XY_problem); you want application performance, and the GIL seems like an obvious bottleneck. Just remember that you're *intentionally* breaking Python's memory model. ```python @@ -22,14 +22,14 @@ N = 1_000_000_000 # Cython -Put simply, [Cython](https://cython.org/) is a programming language that looks a lot like Python, gets translated to C or C++ before compiling, and has a lot of tools to interface with the [CPython](https://en.wikipedia.org/wiki/CPython) API. It's great for building Python wrappers to C and C++ libraries, writing optimized code for numerical processing, and a bunch of other things. As Coffeescript is to Javascript, so is Cython to C. +Put simply, [Cython](https://cython.org/) is a programming language that looks a lot like Python, gets translated to C or C++ before compiling, and integrates well with the [CPython](https://en.wikipedia.org/wiki/CPython) API. It's great for building Python wrappers to C and C++ libraries, writing optimized code for numerical processing, and a bunch of other things. As Coffeescript is to Javascript, so is Cython to C. -This article will focus on two specific utilities provided by Cython: +When it comes to managing the GIL, there are two utilities to keep in mind: - The `nogil` [function annotation](https://cython.readthedocs.io/en/latest/src/userguide/external_C_code.html#declaring-a-function-as-callable-without-the-gil) marks a function as safe to use without the GIL - The `with nogil` [context manager](https://cython.readthedocs.io/en/latest/src/userguide/external_C_code.html#releasing-the-gil) explicitly unlocks the CPython GIL while in that block -Whenever Cython code runs inside a `with nogil` block, the main Python process is allowed to continue doing work elsewhere. We'll calculate the Fibonacci sequence to demonstrate this principle in action: +Whenever Cython code runs inside a `with nogil` block, the Python interpreter is unblocked and allowed to continue work elsewhere. We'll calculate the Fibonacci sequence to demonstrate this principle in action: ```python @@ -74,21 +74,24 @@ First, let's time how long it takes Cython to calculate the billionth Fibonacci _ = cython_gil(N); ``` - CPU times: user 365 ms, sys: 0 ns, total: 365 ms - Wall time: 372 ms - - +>
+> CPU times: user 365 ms, sys: 0 ns, total: 365 ms +> +> Wall time: 372 ms +>```python %%time _ = cython_nogil(N); ``` - CPU times: user 381 ms, sys: 0 ns, total: 381 ms - Wall time: 388 ms +>
+> CPU times: user 381 ms, sys: 0 ns, total: 381 ms +> Wall time: 388 ms +>-Both versions (with and without GIL) take approximately the same amount of time to run. If we run them in parallel, *even though two threads are used*, we expect the time to double because only one thread can be active at a time: +Both versions (with and without GIL) take effectively the same amount of time to run. If we run them in parallel without unlocking the GIL, *even though two threads are used*, we expect the time to double (only one thread can be active at a time): ```python @@ -104,11 +107,13 @@ t1.start(); t2.start() t1.join(); t2.join() ``` - CPU times: user 641 ms, sys: 5.62 ms, total: 647 ms - Wall time: 645 ms +>
+> CPU times: user 641 ms, sys: 5.62 ms, total: 647 ms +> Wall time: 645 ms +>-However, if one thread releases the GIL, the second thread is free to acquire the GIL and perform its processing in parallel: +However, one thread releasing the GIL means that the second thread is free to acquire the GIL and perform its processing in parallel: ```python @@ -120,8 +125,10 @@ t1.start(); t2.start() t1.join(); t2.join() ``` - CPU times: user 717 ms, sys: 372 µs, total: 718 ms - Wall time: 358 ms +>
+> CPU times: user 717 ms, sys: 372 µs, total: 718 ms +> Wall time: 358 ms +>Keep in mind that **the order in which threads are started matters**! @@ -137,11 +144,13 @@ t1.start(); t2.start() t1.join(); t2.join() ``` - CPU times: user 667 ms, sys: 0 ns, total: 667 ms - Wall time: 672 ms +>
+> CPU times: user 667 ms, sys: 0 ns, total: 667 ms +> Wall time: 672 ms +>-Even though the second thread releases the GIL lock, it can't start until the first has completed, thus the overall runtime is double that of the previous example. +Even though the second thread releases the GIL lock, it can't start until the first has completed. Thus, the overall runtime the same as running two GIL-locked threads. Finally, be aware that attempting to unlock the GIL from a thread that doesn't own it will crash the **interpreter**, not just the thread attempting the unlock: @@ -158,29 +167,26 @@ cdef int cython_recurse(int n) nogil: cython_recurse(2) ``` -Output: +>
+> Fatal Python error: PyEval_SaveThread: NULL tstate +> +> Thread 0x00007f499effd700 (most recent call first): +> File "/home/bspeice/.virtualenvs/release-the-gil/lib/python3.7/site-packages/ipykernel/parentpoller.py", line 39 in run +> File "/usr/lib/python3.7/threading.py", line 926 in _bootstrap_inner +> File "/usr/lib/python3.7/threading.py", line 890 in _bootstrap +>-```text -Fatal Python error: PyEval_SaveThread: NULL tstate +In practice, it's not difficult to avoid this ussue. While `nogil` functions likely shouldn't contain `with nogil` blocks GIL themselves, Cython can [conditionally acquire/release the GIL](https://cython.readthedocs.io/en/latest/src/userguide/external_C_code.html#conditional-acquiring-releasing-the-gil). Cython's documentation for [external C code](https://cython.readthedocs.io/en/latest/src/userguide/external_C_code.html#acquiring-and-releasing-the-gil) contains plenty of information on how to safely manage the GIL. -Thread 0x00007f499effd700 (most recent call first): - File "/home/bspeice/.virtualenvs/release-the-gil/lib/python3.7/site-packages/ipykernel/parentpoller.py", line 39 in run - File "/usr/lib/python3.7/threading.py", line 926 in _bootstrap_inner - File "/usr/lib/python3.7/threading.py", line 890 in _bootstrap -``` - -In practice, it's easy to avoid this problem. While `nogil` functions likely shouldn't be managing the GIL themselves, Cython can also [conditionally acquire/release the GIL](https://cython.readthedocs.io/en/latest/src/userguide/external_C_code.html#conditional-acquiring-releasing-the-gil). Cython's documentation for [external C code](https://cython.readthedocs.io/en/latest/src/userguide/external_C_code.html#acquiring-and-releasing-the-gil) contains plenty of information on how to safely manage the GIL. - -To conclude: use Cython's `nogil` annotation to mark functions as safe for calling when the GIL is unlocked, and `with nogil` to actually unlock the GIL. Because Cython refuses to compile code declared `nogil` if it interacts with the CPython API, it is difficult to trigger safety issues at runtime. +To conclude: use Cython's `nogil` annotation to mark functions as safe for calling when the GIL is unlocked, and `with nogil` to actually unlock the GIL. Because Cython refuses to compile functions declared `nogil` if they interact with the CPython API, it is difficult to trigger safety issues at runtime. # Numba -Like Cython, [Numba](https://numba.pydata.org/) is also a "compiled Python." Where Cython works by compiling a Python-like language to C/C++, Numba compiles Python bytecode *directly to machine code* at runtime. Behavior is controlled using a special `@jit` decorator; calling a decorated function first compiles it to machine code, and then runs it. Calling the function a second time won't trigger recompilation unless the argument types change. +Like Cython, [Numba](https://numba.pydata.org/) is also a "compiled Python." Where Cython works by compiling a Python-like language to C/C++, Numba compiles Python bytecode *directly to machine code* at runtime. Behavior is controlled using a special `@jit` decorator; calling a decorated function first compiles it to machine code, and then runs it. Calling the function a second time triggers recompilation only if the argument types change. -When writing code with Numba, we can unlock the GIL by adding `nogil=True` to the `@jit` decorator. Note that the `nogil` argument is separate from the `nopython` argument; while it is necessary for code to be compiled in [`nopython` mode](http://numba.pydata.org/numba-doc/latest/user/5minguide.html#what-is-nopython-mode) in order to release the GIL, the GIL will remain locked if `nogil=False` (which is the default). - -We'll repeat the same Fibonacci experiment, this time using Numba instead of Cython: +Numba works best when a `nopython=True` argument is added to the `@jit` decorator; functions compiled in [`nopython`](http://numba.pydata.org/numba-doc/latest/user/jit.html?#nopython) mode ignore the CPython API and have performance comparable to C. Additionally, we can unlock the GIL by adding `nogil=True` to the `@jit` decorator. Note that `nogil` and `nopython` are different arguments; while it is necessary for code to be compiled in `nopython` mode in order to release the GIL, the GIL will remain locked if `nogil=False` (the default). +Let's repeat the same Fibonacci experiment, this time using Numba instead of Cython: ```python # The `int` type annotation is only for humans and is ignored @@ -202,9 +208,9 @@ def numba_nogil(n: int) -> int: return c -# We have to implement the algorithm multiple times -# because the annotation only applies to the current -# function, not functions that it calls. +# We implement the algorithm multiple times because the GIL is unlocked +# whenver we enter a function with `nogil=True`, and we want to keep the +# GIL locked during this function's execution. @jit(nopython=True) def numba_gil(n: int) -> int: if n <= 1: @@ -223,28 +229,31 @@ def numba_gil(n: int) -> int: # Call each function once to force compilation; we don't want -# the timing statistics to include the compilation step. +# the timing statistics to include how long it takes to compile. numba_nogil(N) numba_gil(N); ``` We'll perform the same tests as Cython; first, figure out how long it takes to run: - ```python %%time _ = numba_gil(N) ``` - CPU times: user 253 ms, sys: 258 µs, total: 253 ms - Wall time: 251 ms +>
+> CPU times: user 253 ms, sys: 258 µs, total: 253 ms +> Wall time: 251 ms +>-Aside: it's not immediately clear why Numba takes ~20% less time to produce the same result as Cython. + +Aside: it's not clear why Numba takes ~20% less time to produce the same result as Cython. +Local tests I've run show that nopython mode doesn't affect runtime in this example. + When running two GIL-locked threads in parallel, the result (as expected) takes around twice as long to compute: - ```python %%time t1 = Thread(target=numba_gil, args=[N]) @@ -253,11 +262,13 @@ t1.start(); t2.start() t1.join(); t2.join() ``` - CPU times: user 541 ms, sys: 3.96 ms, total: 545 ms - Wall time: 541 ms +>
+> CPU times: user 541 ms, sys: 3.96 ms, total: 545 ms +> Wall time: 541 ms +>-And when running the GIL-unlocking thread first, we can run threads in parallel: +And when the GIL-unlocking thread runs first, we can run threads in parallel: ```python @@ -268,8 +279,10 @@ t1.start(); t2.start() t1.join(); t2.join() ``` - CPU times: user 551 ms, sys: 7.77 ms, total: 559 ms - Wall time: 279 ms +>
+> CPU times: user 551 ms, sys: 7.77 ms, total: 559 ms +> Wall time: 279 ms +>Just like Cython, starting a GIL-locked thread first leads to overall runtime taking twice as long: @@ -283,8 +296,10 @@ t1.start(); t2.start() t1.join(); t2.join() ``` - CPU times: user 524 ms, sys: 0 ns, total: 524 ms - Wall time: 522 ms +>
+> CPU times: user 524 ms, sys: 0 ns, total: 524 ms +> Wall time: 522 ms +>Finally, unlike Cython, Numba will unlock the GIL if and only if it is currently acquired; recursively calling `@jit(nogil=True)` functions is perfectly safe: @@ -305,6 +320,10 @@ numba_recurse(2); # Conclusion -While unlocking the GIL is often a solution in search of a problem, both Cython and Numba provide relatively easy means of unlocking the GIL. This enables true parallelism (not just [concurrency](https://stackoverflow.com/a/1050257)) that is impossible in vanilla Python. +While unlocking the GIL is often a solution in search of a problem, both Cython and Numba provide means to unlock the GIL when applicable. This enables true parallelism (not just [concurrency](https://stackoverflow.com/a/1050257)) that is impossible in vanilla Python. -Before finishing, it's important to address pain points that will show up applying these techniques to a more realistic project. First, production-ready code in a GIL-free context will likely need to worry about running code with non-trivial data structures; GIL-free functions aren't useful if they're constantly interacting with Python objects. Cython provides [extension types](http://docs.cython.org/en/latest/src/tutorial/cdef_classes.html) to address this, and Numba provides the [`@jitclass`](https://numba.pydata.org/numba-doc/dev/user/jitclass.html) decorator; both are outside the scope of this article. Second, building and distributing applications that make use of Cython/Numba can be complicated. Cython requires running the compiler, linking with external dependencies, and distributing a binary wheel. Because Numba is compiled just-in-time, installation/distribution is far simpler, but errors aren't detected until runtime. +Before finishing, it's important to address pain points that will show up if these techniques are used in a more realistic project: + +First, code running in a GIL-free context will likely also need non-trivial data structures; GIL-free functions aren't useful if they're constantly interacting with Python objects. Cython provides [extension types](http://docs.cython.org/en/latest/src/tutorial/cdef_classes.html) to address this, and Numba provides the [`@jitclass`](https://numba.pydata.org/numba-doc/dev/user/jitclass.html) decorator to address this need. + +Second, building and distributing applications that make use of Cython/Numba can be complicated. Cython requires running the compiler, linking with external dependencies, and distributing a binary wheel. Numba is generally simpler because code is distributed as-is and compiled just-in-time, but errors aren't detected until runtime and debugging can be problematic.