diff --git a/cuburn/genome/convert.py b/cuburn/genome/convert.py index a921265..5868268 100644 --- a/cuburn/genome/convert.py +++ b/cuburn/genome/convert.py @@ -172,7 +172,7 @@ def flam3_to_node(flame): n['type'] = 'node' return n -def convert_file(path): +def nodes_from_xml_path(path): """Quick one-shot conversion for an XML genome.""" flames = XMLGenomeParser.parse(open(path).read()) if len(flames) > 10: @@ -183,4 +183,4 @@ def convert_file(path): if __name__ == "__main__": import sys - print '\n\n'.join(map(to_json, convert_file(sys.argv[1]))) + print '\n\n'.join(map(to_json, nodes_from_xml_path(sys.argv[1])))